1. Li Y, Robins JH, Ye J, Huang Z, Wen Q, Zhang G (2012) Adaptive diversity of innate immune receptor family short pentraxins in Murinae. FEBS Letter (DOI: 10.1016/j.febslet.2012.01.048).
2. Ye J (通讯作者), Nie W, Wang J, Su W, Jing M, Graphodatsky AS, Yang F (2011) Genome-wide comparative chromosome map between human and the Forrest’s pika (Ochotona forresti) established by cross-species chromosome painting: further support for the Glires hypothesis. Cytogenetic and Genome Research, 132: 40-46.
3. Liu Y, Ye J (通讯作者), Fu B, Ng BL, Wang J, Su W, Yang F, Nie W（2011）Molecular cytogenetic characterization of the genome organization of six-banded armadillo (Euphractus sexcinctus). Cytogenetic and Genome Research, 132: 31-40.
4. Che J, Wang J, Su W, Ye J, Wang Y, Nie W, Yang F (2008) Construction, characterization and FISH mapping of a bacterial artificial chromosome library of Chinese pangolin (Manis pentadactyla). Cytogenetic and Genome Research, 122: 55-60.
5. Chen L, Ye J, Liu Y, Wang J, Su W, Yang F, Nie W (2007) Construction, Characterization, and Chromosomal Mapping of a Fosmid Library of the White-Cheeked Gibbon (Nomascus leucogenys). Genomics, Proteomics and Bioinformatics, 5: 143-259.
6. Ye J, Biltueva L, Huang L, Nie W, Wang J, Jing M, Su W, Vorobieva NV, Jiang X, Graphodatsky AS, Yang F (2006) Cross-species chromosome painting unveils cytogenetic signatures for the Eulipotyphla and evidence for the polyphyly of Insectivora. Chromosome Research, 14: 151-159.